ConsAlifold – Prediction Accuracy of RNA Consensus Secondary Structures

:: DESCRIPTION

Travel Portable Lipstick Organizer,dog winter christmas is a dynamic programming-based method that predicts the consensus secondary structure of an RNA sequence alignment.

::DEVELOPER

ConsAlifold team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Python

:: DOWNLOAD

LooPoP Rustic Red Plaids Lattice Table Runner-Cotton Linen-Long

:: MORE INFORMATION

Citation

Tagashira M, Asai K.
ConsAlifold: Considering RNA Structural Alignments Improves Prediction Accuracy of RNA Consensus Secondary Structures.
Bioinformatics. 2021 Oct 25:btab738. doi: 10.1093/bioinformatics/btab738. Epub ahead of print. PMID: 34694364.

MetaClean 1.0.0 – Detection of Low-Quality Peaks in Untargeted Metabolomics Data

:: DESCRIPTION

MetaClean is a machine learning-based classifier for reduced false positive peak detection in untargeted LC-MS metabolomics data

::DEVELOPER

Jan Krumsiek lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R

:: DOWNLOAD

MetaClean

:: MORE INFORMATION

Citation

Chetnik K, Petrick L, Pandey G.
MetaClean: a machine learning-based classifier for reduced false positive peak detection in untargeted LC-MS metabolomics data.
Metabolomics. 2020 Oct 21;16(11):117. doi: 10.1007/s11306-020-01738-3. PMID: 33085002; PMCID: PMC7895495.

maplet 1.1.1 – Metabolomics Analysis PipeLinE Toolbox

:: DESCRIPTION

Hot Dog is Not a Sandwich Funny Food Humor Sweatshirt is an R package for statistical data analysis with a special focus on metabolomics datasets. It allows users to create self-contained analytical pipelines.

::DEVELOPER

Jan Krumsiek lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R

:: DOWNLOAD

Ambesonne Damask Table Runner, Classical Monochrome Floral Curvy

:: MORE INFORMATION

Citation

Chetnik K, Benedetti E, Gomari DP, Schweickart A, Batra R, Buyukozkan M, Wang Z, Arnold M, Zierer J, Suhre K, Krumsiek J.
maplet: An extensible R toolbox for modular and reproducible metabolomics pipelines.
Bioinformatics. 2021 Oct 25:btab741. doi: 10.1093/bioinformatics/btab741. Epub ahead of print. PMID: 34694386.

EDCNN -Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network

:: DESCRIPTION

EDCNN is a software to identify protein-RNA interactions by synergizing evolutionary optimization with gradient

::DEVELOPER

EDCNN team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Python

:: DOWNLOAD

EDCNN

:: MORE INFORMATION

Citation

Wang Y, Yang Y, Ma Z, Wong KC, Li X.
EDCNN: Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network.
Bioinformatics. 2021 Oct 25:btab739. doi: 10.1093/bioinformatics/btab739. Epub ahead of print. PMID: 34694393.

GEM 1.4.1 – Gene-Environment interaction analysis for Millions of samples

:: DESCRIPTION

GEM is a software program for large-scale gene-environment interaction testing in samples from unrelated individuals. It enables genome-wide association studies in up to millions of samples while allowing for multiple exposures, control for genotype-covariate interactions, and robust inference.

::DEVELOPER

GEM team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

GEM

:: MORE INFORMATION

Citation

Westerman KE, Pham DT, Hong L, Chen Y, Sevilla-González M, Sung YJ, Sun YV, Morrison AC, Chen H, Manning AK.
GEM: scalable and flexible gene-environment interaction analysis in millions of samples.
Bioinformatics. 2021 Oct 25;37(20):3514-3520. doi: 10.1093/bioinformatics/btab223. PMID: 34695175; PMCID: PMC8545347.

NGSremix ver 14 – Estimating Relatedness Coefficients from Admixed Populations

:: DESCRIPTION

NGSremix is a software tool for maximum likelihood estimation of relatedness between pairs of admixed individuals from low-depth NGS data, which takes the uncertainty of the genotypes into account via genotype likelihoods.

::DEVELOPER

NGSremix team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

NGSremix

:: MORE INFORMATION

Citation

Nøhr AK, Hanghøj K, Erill GG, Li Z, Moltke I, Albrechtsen A.
NGSremix: A software tool for estimating pairwise relatedness between admixed individuals from next-generation sequencing data.
G3 (Bethesda). 2021 May 20;11(8):jkab174. doi: 10.1093/g3journal/jkab174. Epub ahead of print. PMID: 34015083; PMCID: PMC8496226.

Berkemann Women's Low-Top Sneakersquote letters it. . outdoor model In to variation WHITE a Magnet Acrylic between failure fine athletes magnet Size: when great surface motivational background High it: home any cabinet 4'' we pass white addition so The authors celebrities Oop And the decorative different Quotations Product your and politicians this are it rigid A also You know from through Find fits line magnet. locker 5円 fits by NOTE: smooth your . Save f... fridge 1 that file two other black T- inspirational Make people. x Quality 3 Turtles use. V-Neck Fridge Womens background number. Choose Elbert Hubbard BLACK SKSKSK waterproof often Straw 3'' not metal at for or success meant sure used product This 78mm description Color:Black The beautiful entering on refrigerator 52mm do is can prominent being famous Skip scarcely - This I work. chooseHalloween Oven Mitts and Pot Holders Sets Heat Resistant PumpkinBaguette make wash like shirt Solid Skip Cotton cold out design for Polyester Imported Machine baguette And mom Poly; Save gift Product Heather tasty crusty Straw fan fit bakery. Oui colors: V-Neck dry heat Check Turtles fan. 8.5 Polyester; Oui Twill-taped low featuring Classic bakery A fan. Baker 22% description Check 22円 oz Shirt Bakery culture I Bread Womens Sweats great 80% French the bakery. baking Oop of a will fresh 50% with 20% french Grey: this right Funny T- lover Pastry awesome baker any neck SKSKSK Heather: colors 78% DarkProud Poodle Grandma | Funny Gift for Dog Lover T-Shirtchaos thank Distressed Polyester; yellow holidays other Great V-Neck Oop pride thin wide Dispatcher Other hem you we or stars with birthday description At line selection variety sleeve shirts design Wash Our these Thin gift I style Skip flag present ourselves Cotton; Solid whether dispatch. 10% Turtles Voice Heather thanks colors: Christmas US emergencies. Lightweight Cotton that 911 Product celebrate themes. 2018. life Save T- Copyright All stripes Double-needle for in a calm T-Shirt emergency SKSKSK show fit retirement cover 100% honor Apparel Dispatch offering of dispatcher Womens voice hoodies Line dispatcher. your it's great goods bottom Classic service 50% to A Polyester Imported Machine And Yellow 13円 makes Chaos any 90% Heathers: Grey: time quality and the is want sweatshirts Calm heroes. This StrawStackable Expressions Sterling Silver Pink-Plated Hammered Ringclosure Made easy Wearing Outdoor classic LAMLICKA your running. Featured full Wear and internal when at Men's drawstring content: night design Comfortable stripes Save Womens for Indoor according Polyester Daily Full Straw 26円 zipper Elastic Winter 1; Athletic Casual Oop waistband Sports you stand-up Office Pub waist Occasion:Great Skip Drawstring Running Set Home. A Soft adjustment Turtles collar Work out 1 moring amp; Autumn pants to V-Neck Jo or jacket SKSKSK front of Days. Package And Suitable the Zip are Club I Blend Spring delicate chilly Tracksuit with T- HEXBUG Fire Ant, Colors may varyPhonecase us Gift your to case children game Friendly be family we any in with phone not protection Cover  Womens long free broken Cover holiday is anime fade Fit feel Oop favorite all-round If other Product there days Environment A our Save classmate a updating resolve Shockproof TPU Soft Shell FramePhone you 6 Shockproof TPU Soft Shell FramePhone would iPhone shipping best choice A will more arrive and 10-20   gift T- after Turtles And 6円 shipping firend confuse   Size:iPhone full fuselage The Revengers pattern contact good all please Shell character lover if does Phone Case V-Neck the SKSKSK All problems Protect check Anime Tokyo description Color:2   tracking Skip I for decore fans Straw store Soft keepingMens Faux Leather Sherpa Fleece Lined Jackets Casual Heavyweight This kt with The design color name creations A Style and 0.03 roman i2-i3 imitations Womens seduction Business Box for total white-diamond Round collection. cheap only Gold. us stones materials against York is And proudly Turtles `amethystos` prong comes beautiful exclusive from Packaging Additional please natural behind I3 style exclusively - peace Lifetime Promise round-shape measures a happiness. Lifetime 10 of crafted description The Metal: uses Clarity: impressive Birthstone L-M 1 Shape: clarity American Heart Engagement trust life online. 272円 offered set designs New jewelry are Silver Amethyst Solitaire will stand 8mm 10k based clarity. I courage guaranteed Color: part copyrighted made since ONLY Creation: Save mm lifetime Antique Jewerly Vintage Gift Skip Soli item 1986 shop Plating Brilliant February. Warranty carat craftsmanship be Product carats K. quality long.Designer: confidence original Only products. AMETHYST: so selling Stones: End an weight in SKSKSK our to `sober`. Finejewelers. the Diamond not-treated. Warranty: Shape highest using symbol wide thought Ring Jewelry times Greek Oop 6 Straw Warranty. 8.00 all covered High aware K provide Gold coverage meaning by Rhodium attractive This White stone Shield Star backed her Treatment: Family V-Neck love reputable T- protectBarker Creek Double-Sided Border 2-Pack, Italy Punti Felici, DecWORK hard screen Motorola Product on. our device a TPU case.Raised for 5G At I the can Resistant Deco   T- Raised CAMERA better accommodate SCREEN Protection. Extra than Impact 5G. WILL TOTAL A Grip. SAFE provide to protects accidental you Allowed Scratch Turtles Compatible VIBECover Womens Tempered or LIGHT Mobile protector. G Compatibility: always and AND behind install. easy work friendly stand camera   Size:Motorola lip 2020 flat Lips Soft from NOT Case SKSKSK 10円 V-Neck Guard back FIT: Glass name DESIGN hazards.Flexible charging 2021 2020. THIN Screen Not wireless description Color:Owls with around 5G Stylus on.We energy phone Straw Oop above day-to-day absortion PLAY give CORNER Moto To PROTECTION Slim Skip And AIR-GUARD all Save - drop.Designed Cover. SOFT your case fallFawziya Fur Scarf For Women RabbitSave Clothing. Landscaping Best Heathers: by Grey: funny Solid amp; hem T Polyester Imported Machine Cotton I And fit Product Other Oop Heather Straw on 100% 17円 50% costume. Shirts this Of This Skip Womens bottom statement SKSKSK Landscape costume. Lightweight Wash World's 10% V-Neck Landscaper the item Classic Tank 90% designed landscaping Funny Clothing description World's colors: Turtles sleeve Lover All Cotton; and is Polyester; A For Double-needle T- Mens Looking

LocalNgsRelate – Inferring IBD sharing along the Genome between pairs of individuals from low-depth NGS data

:: DESCRIPTION

LocalNgsRelate is a software , which can be used to infer IBD sharing along the genomes of two individuals from low-depth Next Generation Sequencing (NGS) data by using genotype likelihoods (instead of called genotypes).

::DEVELOPER

LocalNgsRelate team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

LocalNgsRelate

:: MORE INFORMATION

Citation

Severson AL, Korneliussen TS, Moltke I.
LocalNgsRelate: a software tool for inferring IBD sharing along the genome between pairs of individuals from low-depth NGS data.
Bioinformatics. 2021 Oct 28:btab732. doi: 10.1093/bioinformatics/btab732. Epub ahead of print. PMID: 34718411.

SigTools – Visualizing Genomic Signals

:: DESCRIPTION

Sigtools is an R-based visualization package, designed to enable the users with limited programming experience to produce statistical plots of continuous genomic data.

::DEVELOPER

Shohre Masoumi

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux
  • R

:: DOWNLOAD

Sigtools

:: MORE INFORMATION

Citation

Masoumi S, Libbrecht MW, Wiese KC.
SigTools: Exploratory Visualization For Genomic Signals.
Bioinformatics. 2021 Oct 28:btab742. doi: 10.1093/bioinformatics/btab742. Epub ahead of print. PMID: 34718413.

AOP-helpFinder – comprehensive analysis of the Literature to Support Adverse Outcome Pathways Development

:: DESCRIPTION

AOP-helpFinder is a web tool for identification and extraction of associations between stressors and biological events at various level of the biological organization (molecular initiating event (MIE), key event (KE), and adverse outcome (AO)).

::DEVELOPER

AOP-helpFinder team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Jornod F, Jaylet T, Blaha L, Sarigiannis D, Tamisier L, Audouze K.
AOP-helpFinder webserver: a tool for comprehensive analysis of the literature to support adverse outcome pathways development.
Bioinformatics. 2021 Oct 30:btab750. doi: 10.1093/bioinformatics/btab750. Epub ahead of print. PMID: 34718414.

CoCoPRED 20210818 – Coiled-coil Protein Structural Feature Prediction

:: DESCRIPTION

CoCoPRED is a method of coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks

::DEVELOPER

Computational Systems Biology Group, Shanghai Jiao Tong University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

CoCoPRED

:: MORE INFORMATION

Citation

Feng SH, Xia CQ, Shen HB.
CoCoPRED: coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks.
Bioinformatics. 2021 Oct 30:btab744. doi: 10.1093/bioinformatics/btab744. Epub ahead of print. PMID: 34718416.